Public Member Functions | |
AlnMatrix (size_t const rows, size_t const cols) | |
bitvector const & | operator[] (size_t const r) const |
bool | incorporate (span_t const &rspan, span_t const &cspan, vector< uchar > const &aln, bool const flip) |
size_t | size () const |
Public Attributes | |
vector< bitvector * > | m1 |
vector< bitvector * > | m2 |
Definition at line 560 of file try-align2.cc.
AlnMatrix::AlnMatrix | ( | size_t const | rows, | |
size_t const | cols | |||
) |
bitvector const& AlnMatrix::operator[] | ( | size_t const | r | ) | const [inline] |
Definition at line 568 of file try-align2.cc.
size_t AlnMatrix::size | ( | ) | const [inline] |
Definition at line 575 of file try-align2.cc.
vector<bitvector*> AlnMatrix::m1 |
vector<bitvector*> AlnMatrix::m2 |